"Frontmatter". In: Plant Genomics and Proteomics


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Christopher A. Cullis - Plant Genomics and Proteomics-J. Wiley & Sons (2004)

S
UMMARY
The technology for acquiring molecular data about the whole plant kingdom
has progressed, and continues to progress, rapidly. These technologies, and
the resources being generated by large infrastructure projects, should allow
the whole community of plant biologists to gain new insights into the work-
ings of their favorite organisms. The volume of data being generated is
almost overwhelming, and there is a need to ensure that these data remain
available as projects are completed. In addition, the need for informatics will
continue to grow, both in the realm of software to visualize the data and for
the analysis of the data. 
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U M M A R Y
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R
EFERENCES
Andersen, J. S., and M. Mann (2000) Functional genomics by mass spectrometry. FEBS
Lett. 480, 25–31.
Bendixen, C., S. Gangloff. and R. Rothstein (1994) A yeast mating-selection scheme
for detection of protein-protein interactions. Nucleic Acids Res22, 1778–1779.
Brazma, A., P. Hingamp, J. Quackenbush, G. Sherlock, P. Spellman, C. Stoeckert, 
J. Aach, W. Ansorge, C. A. Ball, H. C. Causton, T. Gaasterland, P. Glenisson, 
F. C. P. Holstege, I. F. Kim, V. Markowitz, J. C. Matese, H. Parkinson, 
A. Robinson, U. Sarkans, S. Schulze-Kremer, J. Stewart, R. Taylor, J. Vilo, and 
M. Vingron (2001) Minimum information about a microarray experiment
(MIAME)—toward standards for microarray data. NatGenet29, 365–371.
Brenner, S., M. Johnson, J. Bridgham, G. Golda, D. H. Lloyd, D. Johnson, S. Luo, S.
McCurdy, M. Foy, M. Ewan, R. Roth, D. George, S. Eletr, G. Albrecht, E. Vermaas,
S. R. Williams, K. Moon, T. Burcham, M. Pallas, R. B. DuBridge, J. Kirchner, K.
Fearon, J. Mao, and K. Corcoran (2000) Gene expression analysis by massively
parallel signature sequencing (MPSS) on microbead arrays Nat. Biotechnol. 18,
630–634.
Diatchenko, L., A. Chenchik, and P. D. Siebert (1998) Suppression subtractive
hybridization: a method for generating subtracted cDNA libraries starting from
poly(A+) or total RNA. In: RT-PCR Methods for Gene Cloning and Analysis. Eds.
Siebert, P. and Larrick, J.: BioTechniques Books, Westborough, Massachusetts,
213–239.
Ewing, B., L. Hillier, M. C. Wendl, and P. Green (1998) Base-calling of automated
sequencer traces using phred. I. Accuracy assessment. Genome Res. 8, 175–
185. 
Ewing, B., and P. Green (1998) Base-calling of automated sequencer traces using
phred. II. Error probabilities. Genome Res8, 86–194.
Gordon, D., C. Abajian, and P. Green (1998) Consed—a graphical tool for sequence
finishing. Genome Res8, 195–202
Gubler, U., and B. J. Hoffman (1983) A simple and very efficient method for 
generating cDNA libraries. Gene 25, 263–269.
Huang, X., G. Herrmannsfeldt, T. Jones, J. Qian, S. L. Rash, C. P. Smith, and C. 
Boysen (2000) CAP4—Paracel’s DNASequence Assembly Program
http://www.paracel.com/publications/cap4_092200.pdf
Huang, X., and A. Madan (1999) CAP3: A DNA sequence assembly program. Genome
Res9, 868–877.
Kusumi K., J. Smith, J. Segre, D. Koos, and E. Lander (1993) Construction of a 
large-insert yeast artificial chromosome library of the mouse genome. Mamm.
Genome 4, 391–392.
Liang, P., and A. B. Pardee (1992) Differential display of eukaryotic messenger RNA
by means of the polymerase chain reaction. Science 257, 967–971.
Madden, S. L., C. J. Wang, and G. Landes (2000) Serial analysis of gene expression:
From gene discovery to target identification. Drug Discovery Today 5, 415–425.
Mann, M., and A. Pandey (2001) Use of mass spectrometry-derived data to annotate
nucleotide and protein sequence databases. Trends Biochem. Sci26, 54–61.
4 4
2. T
H E
B
A S I C
T
O O L B O X
— A
C Q U I R I N G
F
U N C T I O N A L
G
E N O M I C
D
ATA


Peterson D., J. Tomkins, D. Frisch, R. Wing. and A. Paterson (2000) Construction 
of plant bacterial artificial chromosome (BAC) libraries: an illustrated guide. 
J. Agric. Genomics vol. 5 (http://www.ncgr.org/jag/papers00/paper300/
indexpage300.html).
Pandey, A, and M. Mann (2000) Proteomics to study genes and genomes. Nature 405,
837–846.
Powell, J. (1998) Enhanced concatemer cloning - a modification to the SAGE (Serial
Analysis of Gene Expression) technique. Nucleic Acids Res26, 3445–3446.
Rowley, A., J. S. Choudhary, M. Marzioch, M. A. Ward, M. Weir, R. C. Solari, and 
W. P. Blackstock (2000) Applications of protein mass spectrometry in cell biology.
Methods 20, 383–397.
Thompson, J. D., D. G. Higgins, and T. J. Gibson (1994) CLUSTAL W: improving the
sensitivity of progressive multiple sequence alignment through sequence
weighting, positions-specific gap penalties and weight matrix choice. Nucleic
Acids Res22, 4673–4680.
Tsugita, A, and M. Kamo (1999) 2-D electrophoresis of plant proteins. Methods Mol.
Biol112, 95–97.
W
EB
R
ESOURCES
http://hbz7.tamu.edu/homelinks/tool/bac_content.htm
http://plantgenome.sdsc.edu/AwardeesMeeting/Bioinformatics_and_Databases/
http://ucjeps.berkeley.edu/bryolab/greenplantpage.html
http://www.mousegenome.bcm.tmc.edu/webovergo/OvergoDescription.asp
http://www.research.cornell.edu/Biotech/BIBAC/BIBACHomePage.html
http://www.tree.caltech.edu/protocols/overgo.html
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