Preparation of template dna


Quantitating RNA Yield Using Spectrophotometry


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mRNA synthesis Protocol

Quantitating RNA Yield Using Spectrophotometry
Reading the A260 of a diluted aliquot of the reaction is clearly the simplest way to determine yield, but any unincorporated nucleotides and/or template DNA in the mixture will contribute to the reading. Note Accurate spectrophotometric measurement requires an OD260 ≥ 0.05.
1. Blank the spectrophotometer at 260 nm with an appropriate buffer (e.g., 10 mM Tris, pH 7.5) near neutral pH.
2. Prepare an appropriate dilution of the RNA (1:50–1:100) in the same buffer used to blank the spectrophotometer. Place a piece of laboratory film (e.g., Parafilm® laboratory film) over the top of the cuvette and mix the sample well. The conversion factor for RNA is 0.040 μg/μL per OD260 unit. Take the spectrophotometric reading. For a reading of 0.50, calculate the concentration as follows:
Concentration = A260 × dilution factor × conversion factor
Example 0.50 × 500/5 × 0.040 μg/μL = 2 μg/μL
3. Calculate the yield of RNA by multiplying the volume in microliters by the concentration. The sample volume in this example is 25 μL, therefore, the RNA yield is 50 μg.
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