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Apolipoprotein B See
LOW
-
DENSITY LIPOPRO-
TEINS
 (
LDLP
),
APOLIPOPROTEINS
,
VERY LOW
-
DEN-
SITY LIPOPROTEINS
 (
VLDL
).
Apolipoproteins The protein portion of lipo-
proteins (i.e., after the lipid portion is
removed from those molecules). See also
LOW
-
DENSITY LIPOPROTEINS
 (
LDLP
),
PROTEIN
,
LIP-
IDS
,
VERY LOW
-
DENSITY LIPOPROTEINS
 (
VLDL
).
Apomixis A method of reproduction used by
scientists to propagate (hybrid) plants without
having to utilize sexual fertilization. By
combining apomixis with tissue culture
technology, Cai Detian, Ma Piugfu, and Yao
Jialin were able to propagate rice varieties
in 1994. In 1998, Dimitri Petrov, Phillip
Sims, and Chester Deald were able to cause
apomixis in corn (maize). By “fixing” hybrid
dominance, the need for (sexual) breeding is
eliminated and the hybrid vigor is passed
down via the seed from generation to gen-
eration. See also 
ASEXUAL
,
GERM CELL
,
HYBRID
VIGOR
,
TISSUE CULTURE
,
HYBRIDIZATION
 (
PLANT
GENETICS
),
CORN
,
F
1
HYBRIDS
.
Apoptosis Also called “programmed cell
death,” it is a series of programmed steps
that cause a cell to die by “self digestion”
without rupturing and releasing intracellular
contents (e.g., nucleus, chromosomes, refrac-
tile bodies, etc.) into the local (surrounding
tissue) environment. Manifestations of cell
apoptosis include shrinking of the cell’s
cytoplasm and chromatin condensation. If
the normal cell apoptosis is prevented (e.g.,
by an enzyme that is present due to disease)
in the body, cells can grow uncontrollably
(i.e., causing cancer). For example, people
with chronic myelogenous leukemia (CML,
also known as chronic myeloid leukemia)
typically have 10–25 times as many white
blood cells as normal. See also 
CELL
,
CD
95
PROTEIN
,
SIGNAL TRANSDUCTION
,
SIGNALING
,
REFRACTILE BODIES
  (
RB
),
NUCLEUS
,
CHROMO-
SOMES
,
CHROMATIN
,
CYTOPLASM
,
FUSARIUM
,
p53
GENE
,
TUBULIN
,
CANCER
,
SELECTIVE APOPTOTIC
ANTI
-
NEOPLASTIC DRUG
  (
SAAND
),
HYPERSENSI-
TIVE RESPONSE
,
SIGNAL TRANSDUCTION
,
SIGNAL
TRANSDUCERS AND ACTIVATORS OF TRANSCRIP-
TION
  (
STAT
s
),
GENE EXPRESSION CASCADE
,
ENZYME
,
WHITE BLOOD CELLS
,
PHILADELPHIA
CHROMOSOME
,
GLEEVEC

.
Approvable Letter (from the FDA) One of the
final steps in the U.S. Food and Drug Admin-
istration’s (FDA) review process for new
pharmaceuticals. The letter precedes final
FDA clearance for marketing of the new
compound. See also 
FOOD AND DRUG ADMIN-
ISTRATION
 (
FDA
),
IND
,
IND EXEMPTION
.
Aptamers Oligonucleotide molecules that
bind (stick to) other, specific molecules (e.g.,
proteins). Aptamer is from the Latin aptus,
to fit. In 1992, Louis Bock and John Toole
isolated aptamers that bind and inhibit the
blood-coagulation enzyme thrombin. Since
thrombin is crucial to the formation of blood
© 2002 by CRC Press LLC

A
clots (coagulation), such aptamers may
someday be useful for anticoagulant therapy
(e.g., to prevent blood clots following sur-
gery or heart attacks). See also 
ENZYME
,
OLIGONUCLEOTIDE
,
PROTEIN
,
INHIBITION
,
THROM-
BIN
,
THROMBUS
,
THROMBOSIS
.
Arabidopsis thaliana A small weed plant
(Cruciferae) possessing 70,000 kilobase pairs
in its genome, with very little repetitive
DNA. This makes it an ideal model for
studying plant genetics. At least two genetic
maps have been created for Arabidopsis
thaliana (one using yeast artificial chromo-
somes). Because of this, a large base of
knowledge about it has been accumulated by
the scientific community.
A. thaliana was first genetically engineered
in 1986. In 1994, researchers succeeded in
transferring genes for polyhydroxylbutylate
(“biodegradable plastic”) production into
A. thaliana. Because production of poly-
hydroxylbutylate (PHB) requires simulta-
neous expression of three genes (the PHB
production process is “polygenic”) — yet
researchers have only been able to insert a
maximum of two genes — they have to
insert two genes into one plant and one gene
into a second plant, then finally get the (total)
three genes into (offspring) plants via tradi-
tional breeding. During 2001, Eduardo
Blumwald and Hong-Xia Zhang inserted a
salt-tolerance gene from A. thaliana  into a
tomato (Lycopersicon esculentum), and
thereby made that tomato plant resistant to
salt in concentrations up to 200 mM (far
higher than it could previously survive). See
also
BRASSICA
,
GENE
,
EXPRESS
,
BASE PAIR
 (
bp
),
KILOBASE PAIRS
 (
K
bp
),
GENOME
,
GENETIC CODE
,
GENETIC MAP
,
GENETICS
,
TRAIT
,
POLYGENIC
,
DEOXYRIBONUCLEIC ACID
 (
DNA
),
POLYHYDROXYL-
BUTYLATE
  (
PHB
),
YEAST ARTIFICIAL CHROMO-
SOMES
 (
YAC
),
MODEL ORGANISM
,
TOMATO
,
SALT
TOLERANCE
.
Arachidonic Acid (AA) One of the omega-6
(n-6) highly unsaturated fatty acids (HUFA),
AA is synthesized (manufactured) by the
human body from linoleic acid (e.g.,
obtained by consuming soybean oil). AA is
present in human breast milk, and research
indicates that it plays an important role in the
mental development of infants. Arachidonic
acid is a crucial precursor for prostaglandins
and other eicosanoids. The COX-1 enzyme
converts arachidonic acid to constitutive
prostaglandins and the COX-2 enzyme con-
verts arachidonic acid to inducible prosta-
glandins. See also 
C Y C L O O X Y G E N A S E
,
POLYUNSATURATED FATTY ACIDS
  (
PUFA
),
N
-
6
FATTY ACIDS
,
FATTY ACIDS
,
UNSATURATED FATTY
ACIDS
,
LINOLEIC ACID
,
SOYBEAN OIL
,
CONSTITUTIVE
ENZYMES
,
INDUCIBLE ENZYMES
,
LEUKOTRIENES
,
ESSENTIAL FATTY ACIDS
,
EICOSANOIDS
.
Archaea Single-celled life forms that can live
at extreme ocean depths (high pressure) and
in the absence of oxygen. Enzymes robust
(sturdy) enough for industrial process utili-
zation have been isolated by scientists from
some strains of Archaea. Other Archaea
strains are sometimes present in the rumen
(“first stomach”) of cattle and sheep. Those
Archaea produce methane gas by breaking
down some of the feed consumed by the cat-
tle and sheep. See also 
ENZYME
,
EXTREM-
OZYMES
,
CELL
,
ANAEROBE
,
ANAEROBIC
,
STRAIN
.
Arginine (arg) An amino acid, commonly
abbreviated arg. In dry, bulk form arginine is
colorless, crystalline, and water soluble. It is
an essential amino acid of the 
α-ketoglutaric
acid family. See also 
AMINO ACID
,
ESSENTIAL
AMINO ACIDS
,
NITRIC OXIDE SYNTHASE
.
ARM Acronym for antibiotic resistance
marker. See also 
MARKER
 (
GENETIC MARKER
).
ARMD Acronym for Age-Related Macular
Degeneration. See also 
LUTEIN
.
ARMG Acronym for Antibiotic Resistance
Marker Gene. See also 
ANTIBIOTIC
,
ANTIBIOTIC
RESISTANCE
,
GENE
,
MARKER
 (
GENETIC MARKER
),
RECOMBINASE
.
Armyworm Caterpillars (pupae) of the Lepi-
dopteran insect Pseudaletia unipuncta fam-
ily; most of which are harmful to crops (e.g.,
wheat, corn/maize, etc.) grown by humans.
Armyworms are susceptible to some of the
“cry” proteins (e.g., they are killed if they
eat plants genetically engineered to contain
Cry1A(b), Cry9C, or Cry1F proteins).
Armyworms are preyed upon by some spe-
cies of ground beetles, sphecid wasps, toads,
birds, etc. See also 
PROTEIN
,
VOLICITIN
,
CRY
PROTEINS
,
CRY
1
A
(
b
)
PROTEIN
,
CRY
1
F PROTEIN
,
CRY
9
C PROTEIN
,
CORN
,
WHEAT
.
© 2002 by CRC Press LLC

A
AroA Refers to the transgene (cassette) which
was initially isolated/extracted from the
genome of the Agrobacterium bacteria spe-
cies (strain CP4) and inserted via genetic
engineering techniques into a crop plant
(e.g., soybean, Glycine max L.) in order to
make that (soybean) plant tolerant to glypho-
sate-based herbicides (and also sulfosate-
based herbicides). See also 
GENE
,
TRANSGENE
,
CASSETTE
,
GENOME
,
AGROBACTERIUM TUMEFA-
CIENS
,
EPSP SYNTHASE
,
m
EPSPS
,
CP
4
EPSPS
,
SOY-
BEAN
,
HERBICIDE
-
TOLERANT CROP
,
GENETIC
ENGINEERING
,
SOYBEAN PLANT
,
GLYPHOSATE
,
SULFOSATE
.
ARS See
ARS ELEMENT
.
ARS Element A sequence of DNA that will
support autonomous replication (sequence,
ARS). See also 
DEOXYRIBONUCLEIC ACID
(
DNA
),
SEQUENCE
 (
OF A DNA MOLECULE
).
Arteriosclerosis A group of diseases (includ-
ing atherosclerosis) which is characterized
by a decrease in elasticity (stretchiness) and
a thickening of the walls of the body’s arter-
ies. See also 
ATHEROSCLEROSIS
,
CORONARY
HEART DISEASE
 (
CHD
),
PLAQUE
.
Arthritis See
OSTEOARTHRITIS
,
AUTOIMMUNE
DISEASE
.
Ascites Liquid accumulations in the peritoneal
cavity. Used as an input in one of the meth-
ods for producing monoclonal antibodies.
See also 
MONOCLONAL ANTIBODIES
 (
MA
b
),
PERI-
TONEAL CAVITY
/
MEMBRANE
,
ANTIBODY
.
Ascorbic Acid A water-soluble vitamin and
antioxidant. See also 
VITAMIN
,
ANTIOXIDANTS
.
-ase The three-letter suffix that is added to a
(root) word to denote an enzyme. For exam-
ple, the stomachs of reindeer contain liche-
nase, an enzyme that enables reindeer to digest
lichen that the reindeer consume as a source
of winter food. See also 
ENZYME
,
PROTEASE
,
OXYGENASE
,
HUMAN PROTEIN KINASE C
,
HUMAN
SUPEROXIDE DISMUTASE
  (
h
SOD
),
POLYMERASE
,
ATP
ase
,
ATP SYNTHASE
,
REGULATORY ENZYME
.
Asexual Denotes fertilization and/or reproduc-
tion by in vitro means. Without sex. See also
IN VITRO
,
APOMIXIS
,
GERM CELL
.
Asian Corn Borer Also known by its Latin
name, Ostrinia furnacalis is an insect (orig-
inally from Asia) whose larvae (caterpillars)
eat and bore into the corn/maize (Zea
Mays L.) plant. In doing so, they can act as
vectors (carriers) of the fungi known as
Aspergillus flavus (a source of aflatoxin),
Fusarium moniliforme (a source of fumoni-
sin), or Aspergillus parasiticus (a source of
aflatoxin). See also 
EUROPEAN CORN BORER
(
ECB
),
CORN
,
FUNGUS
,
AFLATOXIN
,
FUSARIUM
,
FUSARIUM MONILIFORME
.
Asparagine (asp) An amino acid, commonly
abbreviated asp. In dry, bulk form asparagine
appears as a white, crystalline solid. It is
found in high amounts in many plants. See
also
AMINO ACID
.
Aspartic Acid A dicarboxylic amino acid
found in plants and animals, especially in
molasses from young sugarcane and sugar
beets. See also 
AMINO ACID
.
Aspergillus flavus See
AFLATOXIN
,
PEROXIDASE
,
BETA CAROTENE
.
Assay A test (specific technique) that measures
a response to a test substance or the efficacy
(effectiveness) of the test substance. See also
IMMUNOASSAY
,
BIOASSAY
,
LUMINESCENT ASSAY
,
HYBRIDIZATION SURFACES
.
Assimilation The formation of self cellular
material from small molecules derived from
food. See also 
INSULIN
-
LIKE GROWTH FACTOR-
1
(
IGF
-
1
),
RIBOSOMES
,
MESSENGER RNA
 (
m
RNA
).
Association of Biotechnology Companies
(ABC) An American trade association of
companies involved in biotechnology and
services to biotechnology companies (e.g.,
accounting, law, etc.). Formed in 1984, the
ABC tended to consist of the smaller firms
involved in biotechnology (and service firms
that worked for all biotechnology compa-
nies). In 1993, the ABC was merged with
the Industrial Biotechnology Association
(IBA) to form the Biotechnology Industry
Organization (BIO). See also 
INDUSTRIAL BIO-
TECHNOLOGY ASSOCIATION
  (
IBA
),
BIOTECH-
N O L O G Y I N D U S T R Y O R G A N I Z A T I O N
  (
B I O
),
BIOTECHNOLOGY
.
Astaxanthin A carotenoid pigment responsi-
ble for the characteristic pink coloring of
salmon, trout, and shrimp. It is produced by
the microorganisms in the natural (wild)
diets of those aquatic animals. Research has
shown that astaxanthin (an antioxidant)
helps boost the immune systems of humans
that consume it. Research has also shown
that astaxanthin helps to reduce oral cancer
© 2002 by CRC Press LLC

A
in rats and inhibit breast cancer in mice. See
also
CAROTENOIDS
,
ANTIOXIDANTS
,
OXIDATIVE
STRESS
.
AT-III A human blood factor that promotes
clotting. A deficiency of AT-III can be inher-
ited or can result from certain surgical pro-
cedures, certain illnesses, and sometimes use
of certain oral contraceptives. See also
FACTOR VIII
.
ATCC See
AMERICAN TYPE CULTURE COLLECTION
(
ATCC
),
TYPE SPECIMEN
,
ACCESSION
.
Atherosclerosis A form of arteriosclerosis
characterized by deposition and buildup of
fatty deposits (plaque) on the internal walls
of the body’s arteries, in addition to the
decreased elasticity of artery walls that char-
acterizes all forms of arteriosclerosis. When
a piece of plaque breaks off, a blood clot
generally forms, and that clot often blocks
blood flow through the artery, causing a heart
attack or stroke. See also 
ARTERIOSCLEROSIS
,
CORONARY HEART DISEASE
 (
CHD
),
CHOLESTEROL
,
THROMBOSIS
,
THROMBUS
,
FLAVONOIDS
,
OXIDA-
TIVE STRESS
,
ANTIOXIDANTS
,
PLAQUE
.
Atomic Weight The total mass of an atom
equal to the sum of the isotope’s number of
protons and neutrons (in the atom’s nucleus).
The atomic weights of the earth’s elements
are based on the assignment of exactly 12.000
as the atomic weight of the carbon-12 isotope
(variation of atom). The atomic (weight) the-
ory was established as a framework in 1869
by Meyer and Mendeléev, but standard pre-
cise values were not adopted internationally
until an international commission on atomic
weights was formed in 1899 in response to
an initiative by the German Chemical Soci-
ety. An element’s atomic weight does not
come out to a whole number (with the excep-
tion of carbon), because of the existence of
isotopes which differ slightly with respect to
the number of neutrons each contains. See
also
MOLECULAR WEIGHT
,
ISOTOPE
.
ATP See
ADENOSINE TRIPHOSPHATE
 (
ATP
).
ATP Synthase An enzyme complex that forms
ATP from ADP and phosphate during oxida-
tive phosphorylation in the inner mitochon-
drial membrane (in animals), in chloroplasts
(in plants), and in cell membranes (in
bacteria). This is an energy-producing reac-
tion in that ATP is a high-energy compound
used by cells to maintain their living condi-
tion. ATP synthase is also present on the
surface of endothelial cells (lining of blood
vessels) where it helps to build new blood
vessels (e.g., to replace tissue damaged by
injury or disease). Under certain circum-
stances, this also creates new blood vessels
that provide blood supply to tumors. When
separated from the cell’s membrane, ATP
synthase hydrolyzes (breaks down) ATP via
a chemical process in which one subunit
(designated g) of ATP synthase rotates
within the other (hollow) part of ATP syn-
thase. See also 
ENZYME
,
CHLOROPLASTS
,
ADE-
NOSINE TRIPHOSPHATE
  (
ATP
),
HYDROLYSIS
,
ADENOSINE DIPHOSPHATE
 (
ADP
),
MITOCHONDRIA
,
TUMOR
,
ENDOTHELIAL CELLS
,
ANGIOSTATIN
.
ATP Synthetase See
ATP SYNTHASE
.
ATPase Adenosine triphosphatase, an enzyme
that hydrolyzes (clips the bond between two
phosphates in) ATP to yield ADP, phosphate,
and energy. The reaction is usually coupled
to an energy-requiring process. ATP is
hydrolyzed in the act of shivering and the
energy produced is converted into heat to
increase body temperature. This type of heat
production involves what is known as a futile
cycle because the energy is converted to (and
wasted as) heat rather than used in motion,
etc. See also 
ATP SYNTHASE
,
ENZYME
,
ADENOS-
INE TRIPHOSPHATE
  (
ATP
),
ADENOSINE DIPHOS-
PHATE
  (
ADP
),
FUTILE CYCLE
,
HYDROLYSIS
,
HYDROLYZE
.
Atrial Natriuretic Factor An atrial peptide
hormone that may regulate blood pressure
and electrolyte balance within the body. An
example is a peptide hormone. See also 
HOR-
MONE
,
ATRIAL PEPTIDES
,
PEPTIDE
.
Atrial Peptides Endocrine components (pro-
teins) that act to regulate blood pressure, as
well as water and electrolyte homeostasis
within the body. Atrial peptides are made by
the heart in response to elevated blood pres-
sure levels, and they stimulate the kidneys
to excrete water and sodium into the urine,
thus lowering blood pressure. They also slow
the heartbeat. An example is a peptide hor-
mone. See also 
ENDOCRINE HORMONES
,
HOMEO-
STASIS
,
ELECTROLYTE
.
Attenuated (pathogens) Inactivated, rendered
harmless (e.g., killed viruses used to make
© 2002 by CRC Press LLC

A
a vaccine). Some of the ways in which
viruses and other pathogens may be attenuated
are by heat, chemical, or radiation treatment.
See also 
PATHOGEN
.
Attenuation (of RNA) Premature termination
of an elongating RNA chain. See also 
RIBO-
NUCLEIC ACID
 (
RNA
).
Aureofacin An antifungal antibiotic produced
by a strain of Streptomyces aureofaciens. At
least one company has incorporated the gene
for this antibiotic (which acts against wheat
take-all disease) into a Pseudomonas fluore-
scens used to confer resistance to wheat take-
all disease by allowing the bacteria to colo-
nize the wheat’s roots. In this way the plant
obtains the benefits of the antibiotic because
the bacteria become part of the plant. See
also
PSEUDOMONAS FLUORESCENS
,
ENDOPHYTE
,
ANTIBIOTIC
,
BACILLUS THURINGIENSIS
 (
B
.
t
.).
Autogenous Control The action of a gene
product (a molecule) that either inhibits
(negative autogenous control) or activates
(positive autogenous control) expression of
the gene that codes for it (Greek auto, self).
The presence of the product either causes or
stops its own production. See also 
GENE
,
EXPRESS
.
Autoimmune Disease A disease in which the
body produces an immunogenic (immune
system) response to some constituent of its
own tissue. In other words, the immune sys-
tem loses its ability to recognize some tissue
or system within the body as “self” and targets
and attacks it as if it were foreign. Autoim-
mune diseases can be classified into those in
which one organ is predominantly affected
(e.g., hemolytic anemia and chronic thyroidi-
tis), and those in which the autoimmune dis-
ease process is diffused through many tissues
(e.g., multiple sclerosis, systemic lupus
erythematosus, and rheumatoid arthritis).
For example, multiple sclerosis is thought
to be caused by T cells attacking acetylcho-
line receptors in the sheaths (myelin) that
surround the nerve fibers of the brain and
spinal cord. This eventually results in loss of
coordination, weakness, and blurred vision.
Arthritis is caused by immune system cells
attacking joint tissues. Certain bacterial
infections (e.g., Lyme disease, Salmonella,
etc.) are followed by arthritis in approximately
10% of cases. The antigen (on surface of
those bacteria) targeted by the human
immune system is similar (in its molecular
shape) to a protein located on the surface of
cells in human joint tissue(s). See also 
THY-
MUS
,
SUPERANTIGENS
,
T CELLS
,
TUMOR NECROSIS
FACTOR
  (
TNF
),
MULTIPLE SCLEROSIS
,
MYOELEC-
TRIC SIGNALS
,
ACETYLCHOLINE
,
LUPUS
,
INSULIN
-
DEPENDENT DIABETES MELLITIS
 (
IDDM
),
DIABETES
,
ANTIGEN
,
BACTERIA
,
SALMONELLA TYPHIMURIUM
,
PROTEIN
,
CELL
.
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