"Frontmatter". In: Plant Genomics and Proteomics
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Christopher A. Cullis - Plant Genomics and Proteomics-J. Wiley & Sons (2004)
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N D E X Plant Genomics and Proteomics, by Christopher A. Cullis ISBN 0-471-37314-1 Copyright © 2004 John Wiley & Sons, Inc. 2 0 4 I N D E X Bacteria, nitrogen-fixing, 138–139 Bacterial artificial chromosomes (BACs). See also BAC entries automated sequencing of, 38 large-insert vectors and, 27 libraries of, 28–32 Bacteriophage l, large-insert vectors and, 27 “Bait” plasmids, 126, 127 Banana, BAC libraries from, 32 Basic Local Alignment Search Tool (BLAST ® ), 173–174, 175, 176, 177, 178 data interpretation using, 183–185 Beijing Genomics Institute, 48, 49 Beneficiaries, of genetically modified organisms, 191 Benzothiodiazole-inducible Pr-1a system, 101 Bermuda standard, 171 bHLH/MYC gene family, 97 Bidirectional promoter, 93, 94 Binary BAC (BIBAC) vector, 28 Bioethics, of plant genomics, 189– 198 Bioinformatics, 167–186. See also Informatics tools; Software Biological databases. See Databases Biotechnology, safety of, 191–192, 193–196. See also Bt crops; Technology Biotic interactions, of plants, 132–141 BP reaction, 25 Brachypodium distachyon, genome size of, 3 Brassica oleraceae, as sequencing target, 65 Breeding methods, in marker-assisted selection, 160–164 Brenner, Sydney, 201 Bt crops, safety of, 191–192, 193 bZIP gene family, 97 Caenorhabditis elegans, 54 CAP3 program, 179–180 CAP4 program, 43 Cartagena Protocol, on genetically modified organisms, 193–196 CC-NBS-LRR gene family, 134, 136 cDNA libraries, 33, 34–35 Celera, 63–64 CEL I mismatch cleavage enzyme, 84 Cells, process control in, 107–108 Cellular homeostasis, in plants, 141 Cell walls, synthesis of, xii CEN2 gene, sequence features of, 12 CEN4 gene, sequence features of, 12 Centromeric DNA, 12–13 Chemical regulation, of gene expression, 99, 100–101 “Chips.” See DNA microarrays Chromatin, 90, 91 structural effects of, 99–102 Chromosomes evolutionary relationships and, 16–19 RFLPs and, 150 variation in plant, 3–7 cis-acting sequences, 95 Class I and class II transposons, 10, 12 Clonase TM , 26, 27 Clones. See also BAC clones; Cloning of complementary DNA, 32–33 number necessary to screen (table), 27 Cloning, 70. See also Clones map-based, 48 Cloning systems, 24–38 CLUSTAL W software, 43 Clustering protocols, for sequence data processing, 63 Coiled coil (CC) genes, 134 Comparative genomics, 182–183 Complementary DNA (cDNA). See also cDNA libraries; Concatenated cDNA sequencing (CCS) in cells, 107–108 in cloning, 32–33 in differential display technology, 36 in gene expression analysis, 110, 112, 113–114 in generating ESTs, 71–73 generating full-length, 73–75 in genome annotation, 78 in microarrays, 37 MPSS and, 117, 118 SAGE and, 114–116 sequencing of, 39, 40, 75–77 I N D E X 2 0 5 sequencing software for, 43 in transgenics, 128 in yeast two-hybrid systems, 126, 127 Complex traits, 147–164 Concatenated cDNA sequencing (CCS), 77 Concentration times time (Cot) parameter, 55–56. See also Cot entries Consumers, attitude toward GMOs, 196–197 “Contamination,” organellar, 61 Contigs, in generating ESTs, 72. See also BAC contigs; Fingerprint contigs (FPC) software; Tentative contigs (TCs) Control of gene expression, 89–103 translational, 103 Conventional breeding methods, in marker-assisted selection, 163–164 Cooperative State Research Education and Extension Services (CSREES), 132 Copper-inducible ACEI system, 101 Cot curves, 55–56 Cot fractionation, 55–56 Cot fractionation-based libraries, 62 Crops, genetic improvement of, xiii–xiv. Download 1.13 Mb. Do'stlaringiz bilan baham: |
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