"Frontmatter". In: Plant Genomics and Proteomics
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Christopher A. Cullis - Plant Genomics and Proteomics-J. Wiley & Sons (2004)
See also Bt crops; Plants; Transgenic
crops Crossbreeding, bioethics of, 189–190 Cucumis melo, BLAST ® sequences for, 183–185 Cy3 fluorochrome, 111 Cy5 fluorochrome, 111 Cypripedium calceolus, DNA content of, 2–3 Cytosine, methylated, 57, 62 Data analyzing genomic, 23–43, 167 expression, 179 gene identification from sequence, 70–73 interpreting, 183–185 static and dynamic, 169 Database-independent software, 4 Databases, 167, 168–170 for Arabidopsis gene insertions, 81 creation of, 39–42 critique of, 41–42 developing, 168–169 from NCBI (table), 176 protein, 181 in proteomics experiments, 123 specialized, 170 Data management, 168 Data mining, 168 Data processing, of shotgun sequence data, 63 Data storage, 169–1701 Delayed nodulation mutants, of legumes, 139 Deletion lines, 150 Dexamethasone-inducible GR fusions, 100 Dexamethasone-inducible GVG system, 100 Dex-inducible and tet-repressible TGV system, 101 DICER enzyme complex, 86, 87 Dicots, intron-mediated enhancement in, 95 Differential display technology, 36–37 Diploid plants, 1 Diseases, 131 plant resistance to, 132–138 Dispersed repetitive sequences, DNA variation via, 10–11 Distributed Annotation System (DAS), 177 DNA, 129. See also Recombinant DNA; T-DNA insertion annotated sequences of, 79 in cells, 107–108 in centromeres, 12–13 in chromatin, 102 controlling gene expression via, 89–91 enhancers in, 91–93 in Luzula chromosomes, 4 methylation and, 57 mutagenesis and, 78 of plants, ix–x, xi in reassociation experiments, 55, 56 of rice, 79 2 0 6 I N D E X sequencing of, 23, 39 single-nucleotide polymorphisms in, 152 DNA fingerprinting, physical mapping and, 51–53 DNA markers, 48, 149–152. See also Marker-assisted selection (MAS) DNA microarrays, 37–38. See also Microarray technology advantages and disadvantages of, 119–120 error estimating in, 112–113 types of, 110 DNA polymerase, in cDNA cloning, 32 DNA-Protein Search program, 179 DNA values, table of selected, 2 DNA variation origin of, 7–16 in plants, 1–3 Dof gene family, 98 Double-stranded RNA (dsRNA), 86, 87 Doubling, of chromosomes, 13–14, 14–15 Downstream element (DST), 99 Downstream processing, 24 Drought stress, 131, 142–144 Ds transposon, 84 Dynamic data, 169 EDS1 gene, 136 Electrospray ionization (ESI), 39 Enhancement, intron-mediated, 95 Enhancer elements, effect on gene expression, 91–93 Enhancers, defined, 91–93 Enhancer traps, 82, 84–85 Environment, plant interactions with, 131–144 Enzymes gene families and, 69 methylation-sensitive, 57 of plants, ix Error estimating, in microarray experiments, 112–113 Escherichia coli, 29, 57, 61 EST assembly, in informatics, 172–173 EST clustering, informatics for, 42–43, 179–180 EST Databases, 63 EST libraries, in informatics, 172–173 EST markers, 52–53 EST numbers, table of, 74 Estradiol-inducible ER-C1 system, 100 Estradiol-inducible XVE system, 100 Ethanol-inducible AlcR system, 101 Ethics, plant genomics and, 189–198 Euchromatin, 57 Eukaryotic promoters, conserved sequences in, 95–96 European Union (EU), moratorium on GMOs by, 192, 193–196 Evolution, chromosomal gene distribution and, 16–19 Expressed sequence tags (ESTs), 30. See also EST entries in cDNA cloning, 32–33 cDNAs versus, 77 in gene expression analysis, 110, 113–114, 119 in gene identification, 70–73, 74 generating, 71–73, 74 genome fractionation via, 54, 55 RFLPs and, 149–150 software for clustering, 42–43, 179–180 Expression data, 179 Expression profiling, 108, 109–120 in pathogen resistance studies, 137–138 Expression vectors, 25 Extracellular LRR proteins, 133, 134, 136, 137 Extraction, isolating source DNA via, 28 FASTA file format, 42 FASTA system, 178 Fingerprint contigs (FPC) software, 51–53 Fingerprinting BAC end sequencing and, 59–60 physical mapping and, 51–53 5¢ sequences, in gene expression, 93 Flax BLAST ® sequences for, 183–185 disease resistance in, 132–133 Miropeats analysis of, 177 I N D E X 2 0 7 Flax polyubiquitin gene, BLAST ® sequences for, 183–185 Floral Genome Project, xi Flowering plants, origin of, xi Fluorescent dyes, in protein separation, 124–125 FootPrinter program, 182 Fractionation, of genomes, 53–58, 61–62 Download 1.13 Mb. Do'stlaringiz bilan baham: |
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