"Frontmatter". In: Plant Genomics and Proteomics
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Christopher A. Cullis - Plant Genomics and Proteomics-J. Wiley & Sons (2004)
Fritillaria assyriaca, genome size of, 2
Full-length cDNAs, 73–75, 75–77 Fungi, mycorrhizal, 138–139 fw2-2 locus, in tomato, 156–160 Gateway TM Technology, cloning via, 25–27 GenBank, 170, 173 GenBank dbEST database, 72–73 plant EST numbers in (table), 74 GenBank Nr (nonredundant) database, 63 Gene enrichment strategy, 48–49 Gene expression. See also Expressed sequence tags (ESTs) chemically regulated, 99, 100–101 control of, 89–103 enhancer elements and, 91–93 5¢ sequences in, 93 introns in, 94–95 promoters for, 91, 92 proteomics and, 120 3¢ sequences in, 93–94 trans-acting factors controlling, 96–98 translational control in, 103 Gene families, 69–70 in Arabidopsis (table), 97–98 Gene-for-gene interaction, 132–134 Gene indices, 179, 180 Gene knockouts, 80 Arabidopsis, 81 Gene linkage, 18–19 Gene number, counting, 9–10 Gene Ontology (GO) project, 169 Genes. See also Genomes avirulence, 133–135 bioinformatics and, 167 complex traits and, 147–164 conditioning QTLs via, 156 defined, 69 discovering, 69–87 disease resistance, 133–138 drought stress in plants and, 142–144 encoding ribosomal RNA, 13 identifying, 69–70, 70–73, 78–87 informatics tools for finding, 180 phenotypes and, 147–149 GeneSeqer program, 180, 185 Gene silencing, 16, 24, 80, 86–87 Gene space, 53–54, 65–66 Genetically modified organisms (GMOs) bioethics of, 190–191 future of, 197 Genetic maps, in genome sequencing, 50–51 Gene traps, 82 Genome browsers, 182–183 Genome collinearity, 17 Genome contraction, hypothetical effects of, 15 Genome expansion, hypothetical effects of, 15 Genomes. See also Genes; Genomics annotation of, 77–78, 79 automated sequencing strategies for, 38 cellular processes and, 107–109 creating complete sequences of, 47–66 fractionation of, 24–25, 53–58, 61–62 functional data from, 23–43 informatics in analyses of, 171 multiple, 16–19 sequencing strategies for, 58–61 structure of plant, 1–20 tools for investigating, 23–24 Genome size of plants, 1–3 processes affecting, 13–16 Genomics. See also Genes; Genomes bioethics of, 189–198 comparative, 182–183 functional, 107–129 goals of, 69 Genomic sequencing, informatics tools for, 180 Global community, data sharing within, 41 2 0 8 I N D E X Gramene database, 42, 168, 170, 183 Grasses gene linkage in, 18–19 genome size increases in, 15 GST (glutathione-S-transferase) genes, 8, 9 GUS (glucuronidase) activity, 82, 83, 84–85, 95 Haplopappus gracilis, chromosome number of, 3 HarvEST program, 179–180 HB gene family, 98 Heat shock cognate 80 (HSC80) gene, 102 Heterochromatin, 20 High-throughput TILLING, 84 Histone core, in chromatin, 102 HMM profiling, 178 Holocentric chromosomes, 4 Human genome, EST collections for, 54 Human Genome browser, 177 Hybridization. See also Yeast two-hybrid system in BAC screening, 30, 31, 32 in microarray experiments, 110–113 RFLPs and, 149–150 Hypermethylation, 57 Hypersensitive response, 133, 134 Hypomethylation, 57 Immobilized pH gradients (IPGs), 124 Ineffective nodulating mutants, of legumes, 139 Informatics tools, 24, 39–43, 170–180. See also Bioinformatics; Software Insertional mutagenesis, 24, 80–82, 83, 84–85 in pathogen resistance studies, 138 International Mapping Consortium, 63 International Rice Genome Sequencing Project (IRGSP), 48, 49 International Sequencing Consortium, 63 Intron-mediated enhancement (IME), 95 Introns, in gene expression, 94–95 Isoelectric focusing (IEF), 124 Jasmonic acid/ethylene-mediated responses, 136–137 Joint Genome Institute, 65 Kinetochore activity, in Luzula, 4 Knockouts, 80 Download 1.13 Mb. Do'stlaringiz bilan baham: |
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